Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0010195 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0010195 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8132
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8132

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F093230	Metagenome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0010195_1768_2730	F042160	AGGAG	MISRYFLDGFGSENELNELLASDALPLVREMQFKFGLKVMGKVVSSSYRTAEAGYMMCHPNGVAVGKVWTTNEGGTNNDQLEYCFRTPYYRKARGQDHTDKETIRSIKLSSLMATLKRQGIVKDMKELTSTKVRQARSGVSYLQSAMGESTKQNSFTVNEIHAMLATLLGESTDGIPVALDLNKCKNILDIYKEADKIRDVKIEESTRFFKNPFYLVGIDAHKHLLIGKFKMTKIGTSSSDCDIETIEGFKRYKTVEDYPELLPLMTMMKISYENRGENKLGPMNFPIMDKYDEGLDAVFFYSSQPSQYDHAWMATPCPI
Ga0335027_0010195_2718_3077	F035193	GGA	MPHLIGELSPVVHPKRWDLIRLPVRRVNDNYIVYVADGYHRIYTDDTLPDVLKSKFAMVLANGDSAFVADSKILRLTLYTNTGPLELDEIGWRASETYYCLVVDRPTLESLKGGTQDDA
Ga0335027_0010195_677_1582	F093230	GGA	VFDVVYGQTWTGETISKDEYEALEKVGFPRLQKYKNLGDEYVYRRYETLPNILGVVRPDNTFEFTGDRYGQGERGIMSDYSDGYFCTDSRRGGMIWWGRKVADGSRKIIPAYRGLRIDCETMQPTKPITVIGRKVDRKVGKTLLADYADFYTTTEVMTKAMDYGVFVKTAAEVLTEHMSLTNPESEHYLLHRRHTEYTSIADALIHTAPLDAAILYMIAWDVGGMRWNVRRYLEHNNTRYSAHEDTPHMMFLNLKRKLNKEIYKQNEQVFKKVEYTNSEMYPPSEWGYTVMVDGMEVQQY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0010195

Overview

Ecosystem & Geography

Associated Families

Sequences