Scaffold Ga0335027_0007673

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0007673
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9416
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F086598	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0007673_5971_6420	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALKRSSYQDVDDDDTWEGFGPKPERQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKEHLMDQRVTFLNGSGVNGTPEQVAYLQRIETRLGRKIFENPLATT
Ga0335027_0007673_7604_7849	F001964	GGAGG	MIRNQFAPPKFKIQISGAIGWSDLKEKVVSYQTVEFATRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPTPERSKP