NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0007410

Scaffold Ga0335027_0007410


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0007410 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9604
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F000868Metagenome / Metatranscriptome853Y
F007468Metagenome / Metatranscriptome350Y
F008305Metagenome / Metatranscriptome335Y
F014250Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0007410_3002_3211F000808AGGAGMEYNYSITTSYDGELVHTLRVSDMLEAVDAWNKCADFGDAKEYATYNLSDPTGKMYTKNFYRNGVVNGK
Ga0335027_0007410_7235_7465F000868AGGAMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGELYADYRFAEMCESNYLKGRFNLFYDLKPEDQYYVEWDEEA
Ga0335027_0007410_7465_7641F008305GAGGMLGYTYKDIQAFGHSLTWAIDTAKSQGDEQNHKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0335027_0007410_7634_7810F007468GAGMDKLIEYMNIHLISLNQDMDKDLNVQSKINIQGQIMATEHLLSVANDILNNDFQGKGY
Ga0335027_0007410_7810_8085F014250GGAMRDIESEFPPRLKKLVDMGEAGIDIMHGELKNIMLEAETQLILAREAEEKSGEAMDSMERTYWEGQMDALTRAYVLTYNLLFAINEREPIK
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