Scaffold Ga0335027_0007331

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0007331
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9652
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F026828	Metagenome	196	Y
F030991	Metagenome / Metatranscriptome	183	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0007331_41_580	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSINATAGQAFYQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIMNSATSNLGDHLNLNITVGNQVILKDFDPSYNSSSRGLSFDRLHSGFTSTTNLEVRLLTDIVIPPQVNFKAELQLGNALMAANDDVTIILKGYGRIFSAGNSF
Ga0335027_0007331_4768_4875	F026828	N/A	MNEELITSAIAFLAGWILKRPDFVQKIISKIFTKK
Ga0335027_0007331_583_1143	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRVVYDSQTTAALTHTFFKGAAQRAFPLSNVGANGNQFQVNEALLVEKVGFFVPANAEGADYNGLGFAGLSVKFDLVIGNKTVIKDASVELGGEQAFYNDGTAASSVIDLEGVGILIPPQVEYYVVAKAYNSATRVASSTRLGVYLFGTGALLNFNTTI
Ga0335027_0007331_6844_7032	F030991	N/A	MVLKYLGCDKKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKDIAIKIYNRTYGVKT
Ga0335027_0007331_8257_9081	F051646	N/A	MSWQIPTQVEQDIIAGKAKYQTFQTGNGGQSILPVPPNSYAVIFGYDFSPAGGGFKHSSRFGAPATFGPQSVLNNAVIRFFETQQISFYTGTDFYPFIHHIDVKSTTTLDSWNVIDPVNNLAVNLSVIEEIDSTPISRQVYITSTNDVAITHGLILNATPATTGAIPVTSRTPGFLTYGGSAQLIQAQTNYGPGGTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDATNGLLEANVALLALGATFVEAAATNYYLCLHYAIYSKTIPEQRG
Ga0335027_0007331_9150_9554	F000710	N/A	MASNMNISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIVNATQLRVTLTINNDVVIDDVVAHELGASVATGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI