Scaffold Ga0335027_0007256

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0007256
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9700
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F004838	Metagenome / Metatranscriptome	421	Y
F011474	Metagenome / Metatranscriptome	290	N
F026828	Metagenome	196	Y
F042709	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0007256_1488_1895	F000710	N/A	MANSVNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPAVLVNALQLRVSLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0335027_0007256_1898_2485	F002287	N/A	MSQVSKLSYVDGKLGAPTSGQQTTRVLFNTIEAPGTTSSLTFFRSFQGLSNGQTNLTQNRLDSMESMVIKTIWLAEYTTAGLLQTFGANAQQTLSIIVGNQTVVKNLPIQFNQGVNGQAYDRLHENAGALNQVIAESATIQAVQPCEIRLLTDIVIPPQVAFEVRIESNNVAYGTGAVVCALAGYGKIFSAGNSF
Ga0335027_0007256_2488_3093	F004838	N/A	MITAQDKILHVASKLGLTSLKDMQASTGAVYDVDTELSGTIFSQATRHANPGVTNINENQFEVNEALLVETIAFYVKDEAGDVLNFQNIYGSNAVIMFDLVIGNKRVMKETPVFAAGSPYTFANVANVTKAAGENQLQSFNPRHQIFMEGAGILIPPQVQWYVSYTIFNVVSGAIIAPTTNTAIGCYLFGTKVLLNFNTSI
Ga0335027_0007256_3627_4124	F042709	GAGG	MNPFLIAGAVALFFLLRKKPPVVDNTTPAVVPFTSANVNAYKNENTKSLFDRRLASSARRVTPDGTGKAIVDGSYKCFAPGNQTRRNAIIKVYEDLDRLQTRINNSTGERRQDARRDKIEKDNERAILVAEHYMICEAFFEELKKKSQTPTQTTVTTAQQERGTL
Ga0335027_0007256_6745_6858	F026828	N/A	MTEELIANAIAFLAGWVLKRPDFVQKILSKLFAKKDK
Ga0335027_0007256_7962_8336	F003659	N/A	MPQTAADAIGRYLIAREDVPVYDLPNGTRIGTINKGNSTAEVYSYVQRPGQVWFMFDYTIPGQTPGAYYVLAKDGRFSLSSAPGNVIVSPSSLPGVDVFPKGSQIKTFALYGIIGVLALLLLKK
Ga0335027_0007256_9305_9598	F011474	N/A	LNNPQTAFIMKEKIDHLTHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS