Scaffold Ga0335027_0007255

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0007255
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9701
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F004838	Metagenome / Metatranscriptome	421	Y
F026828	Metagenome	196	Y
F042709	Metagenome / Metatranscriptome	157	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0007255_1509_1916	F000710	N/A	MANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPAVLVNGLQLRVTLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0335027_0007255_1919_2506	F002287	N/A	MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIWLAKFDTGGVLDTFGGNVQQTLSIIVGNQTVVKNLPIHFNQGVNGQAFDRLHENGGSVNQNDFADRLLQFAQPCEIRLLTDIVIPPQVAFEVRIESNQAAYGTGAVVCALSGYGKIFSAGNSF
Ga0335027_0007255_2506_3111	F004838	N/A	MTAQDKILHVASKLGLTSLKDMQASTGAVYDVDTDISGQIFSSASRHQNPGITNVTQNEFEVNEALLVENIAFYVKNEAGEALNFQGAYGSNAVIVFDLVIGNKRVMKSTPVFAAGSPYTFANTGNITKTAATVDYQFYNPRNQVFLEGAGILIPPQVQWYVDYRVFNVVTGAIIEPTDELGAIGCYLFGTRVLLNFNTSI
Ga0335027_0007255_3645_4145	F042709	GAGG	MNPLLLGLAAALFFLIRKKPTAAPDNTTPAVVPFTAANVNSYKSLNTTSTFDNRLAKEARRVTPDGTGKAIVDGTYKCFAPGNQTRRNAIIKVYEDLERLQTRINNSTGERREEARKDRREKDDERAILVAEHYMICEAFFEELKKKSQTPTQTTITTAQQERGTL
Ga0335027_0007255_633_1439	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVSPNSYVVIFGYDFSPAGGGIVVQAAAQEITGQFYVSNSILRRFETQQISFYTGSEFFPFIHHVNLVNTTVPADFNVLTGALVNALRCTEIDNTPLSRQVYITSTNDVTITHGLITNAIPATTGAIPVTSRTPGFLTYGGSGQLIQAQTNYGPVLTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDATNGLLEANVALLALGAPFVEAAAANYYLCLHYAVYSKTIPEQRG
Ga0335027_0007255_6734_6841	F026828	N/A	MSEELIANAIAFLAGWILKRPDFVQKILSKIFTKK
Ga0335027_0007255_7976_8341	F003659	N/A	MTAADVIGRYLIAKKDVPVYDGPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWIFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVVIAPNVLPSVDVFPSGGIKKYALFGALGLLALLILR