NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0006629

Scaffold Ga0335027_0006629


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0006629 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10164
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F004110Metagenome452Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0006629_2595_2765F093483GGAGGMTVEKTYAGALVVSEIVSWEGVKWLESATYYGYTVKEAKRSFLESCARLNYKIERG
Ga0335027_0006629_2994_3158F003212AGGMKDRYLVTLEIETYDGDPRAWDWQILLGHEDEVKIVETQFKGRVLPTSEGESNE
Ga0335027_0006629_3252_3410F000821AGGAGGMNREYLEAKVDLCLDQAEKNIKEEEIALAIANLKRANLALSRIFNLEEEESE
Ga0335027_0006629_3403_3645F001477AGGAGGMSNVYTIHPPKSDLILFYEVVEPDGSNTWGGASAEQCIQWLSLAPANSRVLVSAWDSDEEDAHLVGQTLDITDIVREASL
Ga0335027_0006629_4945_5577F004110AGTAGMTELHPVTYDLALSVAISISNRYKNHVERDDVKQECLAWAITRATWISEQMLEPNDDKRRHNEQRIAYQMRRVAERYARKEKALKSGYQTTDEAYYESAKLGQLLPFVIASVVDGTVLEQIQQMIQDGQPKGKSSPSEGGNLLATLIDIKRCYMRLDVQDQTLLRLRHFDNYTLQQIAGQLECAVSTADRRCNNSLRKLINLLGGQSPWQ
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