Scaffold Ga0335027_0006136

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0006136
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10535
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003663	Metagenome / Metatranscriptome	474	Y
F009685	Metagenome / Metatranscriptome	314	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0006136_1048_1356	F001781	GGAG	MKPDDKDKLNECLKILDSTDLGLSMVWLWTWSTINNIFEDETYKQKVTIDQMWDNLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEDEDE
Ga0335027_0006136_1518_1748	F001019	GGGGG	MSSYEPSLEILEVNYGCSPGGVDTFEVYDRSEIEPVQIPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA
Ga0335027_0006136_2001_2195	F037727	GGAGG	MTKSSQFLEYIKLHRISLIQDNANLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNSSNERVYE
Ga0335027_0006136_2364_2642	F000868	GAGG	MSDPHGTIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
Ga0335027_0006136_4651_5148	F000714	N/A	VVESTTNQTKEEKMEETTTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVVNLEWELHNGRERQKQNTLLHSKIDSVKEIILEAYADSGDQDTLRAIAEALDIELTKTVQFTASIEVTGTIEVNLLDPYDYDIEDEVTDALFADSNNGNIEVVDQEVCHVREA
Ga0335027_0006136_8102_8377	F003663	AGGTGG	MLSTATALLDATKDSIFDKDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEQEMSDLCATIDEMENLSETILEENE
Ga0335027_0006136_915_1061	F009685	AGGAGG	MKMSDQYVDSVLAEAQRLLWGGSETENIAAHNLIAKLIKDRLPNEEVD