Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0006136 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10535 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (80.65%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000714 | Metagenome / Metatranscriptome | 924 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F001781 | Metagenome / Metatranscriptome | 635 | Y |
F003663 | Metagenome / Metatranscriptome | 474 | Y |
F009685 | Metagenome / Metatranscriptome | 314 | Y |
F037727 | Metagenome / Metatranscriptome | 167 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0006136_1048_1356 | F001781 | GGAG | MKPDDKDKLNECLKILDSTDLGLSMVWLWTWSTINNIFEDETYKQKVTIDQMWDNLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEDEDE |
Ga0335027_0006136_1518_1748 | F001019 | GGGGG | MSSYEPSLEILEVNYGCSPGGVDTFEVYDRSEIEPVQIPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA |
Ga0335027_0006136_2001_2195 | F037727 | GGAGG | MTKSSQFLEYIKLHRISLIQDNANLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNSSNERVYE |
Ga0335027_0006136_2364_2642 | F000868 | GAGG | MSDPHGTIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA |
Ga0335027_0006136_4651_5148 | F000714 | N/A | VVESTTNQTKEEKMEETTTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVVNLEWELHNGRERQKQNTLLHSKIDSVKEIILEAYADSGDQDTLRAIAEALDIELTKTVQFTASIEVTGTIEVNLLDPYDYDIEDEVTDALFADSNNGNIEVVDQEVCHVREA |
Ga0335027_0006136_8102_8377 | F003663 | AGGTGG | MLSTATALLDATKDSIFDKDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEQEMSDLCATIDEMENLSETILEENE |
Ga0335027_0006136_915_1061 | F009685 | AGGAGG | MKMSDQYVDSVLAEAQRLLWGGSETENIAAHNLIAKLIKDRLPNEEVD |
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