NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0006136

Scaffold Ga0335027_0006136


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0006136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10535
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F003663Metagenome / Metatranscriptome474Y
F009685Metagenome / Metatranscriptome314Y
F037727Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0006136_1048_1356F001781GGAGMKPDDKDKLNECLKILDSTDLGLSMVWLWTWSTINNIFEDETYKQKVTIDQMWDNLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEDEDE
Ga0335027_0006136_1518_1748F001019GGGGGMSSYEPSLEILEVNYGCSPGGVDTFEVYDRSEIEPVQIPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA
Ga0335027_0006136_2001_2195F037727GGAGGMTKSSQFLEYIKLHRISLIQDNANLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNSSNERVYE
Ga0335027_0006136_2364_2642F000868GAGGMSDPHGTIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
Ga0335027_0006136_4651_5148F000714N/AVVESTTNQTKEEKMEETTTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVVNLEWELHNGRERQKQNTLLHSKIDSVKEIILEAYADSGDQDTLRAIAEALDIELTKTVQFTASIEVTGTIEVNLLDPYDYDIEDEVTDALFADSNNGNIEVVDQEVCHVREA
Ga0335027_0006136_8102_8377F003663AGGTGGMLSTATALLDATKDSIFDKDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEQEMSDLCATIDEMENLSETILEENE
Ga0335027_0006136_915_1061F009685AGGAGGMKMSDQYVDSVLAEAQRLLWGGSETENIAAHNLIAKLIKDRLPNEEVD

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