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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0003876 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13164 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (74.07%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010302 | Metagenome / Metatranscriptome | 305 | N |
| F015434 | Metagenome / Metatranscriptome | 254 | Y |
| F024955 | Metagenome | 203 | Y |
| F030063 | Metagenome | 186 | Y |
| F074801 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0003876_11603_11770 | F015434 | GGAGG | MESKYPDSWNRHTPKGMNIVNETTKSTKCCDTCQCGQIEEEKFNKLMETQVSFEE |
| Ga0335027_0003876_11760_11933 | F074801 | N/A | VINMGILDNFESSLFPEEAGNGEIIQDEIPFEIEERLNKESIEKYNERLKYMEEYGI |
| Ga0335027_0003876_3979_4410 | F030063 | AGG | VPTSFNYDGKPGYIYNAADDVWYELSGKTDTSGTFEWAGLQSYLSAVTMLESLVAKKGINNYLNPAARDASITSPTAGSICVIRQDSSGNVINQLQYYSGSAWAGVIPSQTGNAGKFLQTDGTIVSWQNAPDAIVTNLMLMGG |
| Ga0335027_0003876_4410_4889 | F024955 | GAGG | MAVENIGSLVPTKIPALIDDANIQDALKAYHYGSYDFDTAETDPEELLNPSIAYTINDLQNQINDQVALELAARNISSAQNSAPVAANFTAFSATIPNGYIWVDKDAAAPVGYISATSVYTATQPTTGLANGVIWIKKGSSPLEMYVYNGDTSTFNQVI |
| Ga0335027_0003876_4925_5500 | F010302 | AGCAG | MVDVLLNTDDVVVIGPPDSIDLLVDIGPQGTRGSKFIVGSGEPNALTSSGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETISFTSGAGSITIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGSWSALTGSKTVHLFISIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |