NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003704

Scaffold Ga0335027_0003704


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003704 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13490
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F005053Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003704_12012_12524F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEEDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINVWADLSNKFKFHTIWVADISPTAPSEELQGFFSSEIILEIKYSRITDSVGRFL
Ga0335027_0003704_12521_13288F001900GGAMLIQAASGLERMMYANQSGPLKDSTVAQVSAYVYYEAAVISKLTTNKQFQSAFAKIIFDQIDTDFGNYIDALARSKPKSLHHVYEWKRAGNKNARLFKLSKISQDGLSFRINYELLQSKSMVPSSNGKRRHVFANKAKVIDEGKPLVIRPKNAERLVFEYEGETVFMPKGKSVTVRRPGGSSATNQFSLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALRVPSDIKKVKYSFSANTIRSQADAALAASFGGAM
Ga0335027_0003704_3556_4059F005053AGGAMPTYLPRGSVLNIEAKDILATPEGTTKIWNKITEHNRSDISISIERIERAVRTSNGTLRKNHIADKRRFSMSWTMLPSYRTLTVDGGWGAEDLRSFYLSDDGKKEFNIRINLAKGGTDTSSTGAAYTPNMAKTSSELYTVVFGGCNFSVVKRGLQPHWNVSIELEEV
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