Scaffold Ga0335027_0003544

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0003544
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13759
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F048306	Metagenome	148	N
F077278	Metagenome	117	Y
F079619	Metagenome	115	N
F085162	Metagenome	111	Y
F085693	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0003544_10987_11334	F079619	N/A	MEEINIQEWDNLQPDPISDKTKVELALIDLYNRLAIQIPTNHQAILDELAEKLLSPEASLTVKQVDSSLDASISETKLTVDRAYNFLREMKLNEVAEKRDQDYMYNWIREKSGKK
Ga0335027_0003544_12024_12266	F031482	N/A	MRNRYEMNPLSMIDGGSRIKITFKNGIEKEYENIKDVSAYVAKVLSESDYMIDRIDMEKEVVTKEWKPLFGRSRFTQDII
Ga0335027_0003544_1950_2873	F085693	N/A	MNTLQTTLTALQSQLESQKEASKYYYDNVFSKEVTTLEASIVEWFYKFTGETYIIKMQSGGEQLQIFSSEEDVKDMWHHNAITIYYYSRYKEEAKAKLSFYSKEVEYSDTKTIAYLKTLGMVAVLLPQINFMMPTWLAEYQQYAQKRYATFEQPISHTEFAIRKTEAQILEEGLASYKQAGFKHTISSSTVCERQYNIPYDEKGAYELNIKPQYFDLQTGRSKYDHVRVYAFEVVGHVKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIAIVYNWENFDSIKYNAKQTERYLDHMNKFTTVVEVA
Ga0335027_0003544_6448_6789	F085162	AGAAG	MKKLKQIWHEIIERWFLLTFFAERMERERLQVLAELVKRNDSLWKNIPVKPRTLKEILTYKEPKKKNIDELVEEYEKRSPIIYDALYEALKNIQQKEKENGYTEKKTTESERN
Ga0335027_0003544_6997_7215	F048306	N/A	MTKEEAQFVKKMCESNSTTWTKLHIEYQKQFVDPALWYQSPSGYQKDTPLPHGNQIDGSELCKEAEKILNKI
Ga0335027_0003544_884_1177	F077278	N/A	MTILQATVDSASVGSAFMQYGILGVLAFLLGYFAWQQYLRLVKKNEQLEEKVDKLQDQMMKILVEERDRLDTLIRDNTAALQELQKTIYKYMVKSKD