NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003438

Scaffold Ga0335027_0003438


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003438 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13951
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003438_1054_1533F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIQRNLSWFEYVAQNAESMVSEWVVAKRLGYEYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDVAVLVTGSSPKMHIVGWIPVVMAKKPRYRNAAQNNWTVPQINLQPIETLQRSNYAHSVI
Ga0335027_0003438_1530_1766F000403N/AMVCIALDWKMGATGMSDFVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQENIIWFCGDCR
Ga0335027_0003438_1721_2338F001897AGGMMAFMDNYEGNKERTDRWLRTFPNGRLEAHIIEFNAEKGYVLVQAKAWRSQTENEPAGIDFAFGYREAYPEKMRRWMVEDTCTSALMRVMALVMGGTEKATKETMEIVNAADVYDPWATKHGDVPSYKTAAEAELSGTPSFGSSDDSWSADAIPGCSHGAMRWNQSKPEAPKSWGGYFCTEKVKEKQCTPRWYVLRSTGKWEPQV
Ga0335027_0003438_2335_2493F009883GGAGMNEASIVITCLIAGALWAVMSYSVGFKEGERQGYTRGRAVARHAVSADRKAK
Ga0335027_0003438_882_1073F003182AGGAGMHILSFDCSICSKLYGKPKQRHGLKKGAELTAHEWFAQCMSCGTFGIKIVDDARIKELSDGLL
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