Scaffold Ga0335027_0002869

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0002869
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15142
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F013887	Metagenome / Metatranscriptome	267	Y
F017290	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0002869_13049_13711	F002357	N/A	MAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVETNSSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKLEPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0335027_0002869_4849_5235	F001834	N/A	MPSTILSSIRTPLATALAGVAGNVYSFVPESVIPPAVVVVPDSPYLELETINKSTIHAKINFTITVAVAYNSNPASLDNIEQLIMSVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT
Ga0335027_0002869_5244_5651	F017290	AGGAG	MATTVITGRDVGLSFTGGTDIQAQATNAILTKVNDRQVYQTMDGEAYKTVNVSGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS
Ga0335027_0002869_7840_9087	F000468	GAGG	MTVWTPDWKLTVAGVDYTDIAISDIAHQSGRDDIYTQPNPSYLQVEIVALSGQTLPFAINDGLTLQVKNSLGTYVSLFGGNITDITVEVSNAGNIANVVSYKLLAMGALVRLAKEVYDSTLSQDFDGDQIFDLLSYSLTNSWNEVSAAQTWAAYDPTITWANAENVGLGEVDQPGLYEMENRGVDPDTIYNIASAIANSAFGYLYEDNEGNIGYADADHRQTYLADNGYTELSANTAIGAGLRTITKAADIRNDIYINYGNNFGSQKTATDTTSIAIYGYRSETVNSLIHDASNAQEVADRYISQRAYPSPAFDSITFPITNPEIDDNDRDALLGVFMGQPIHITDLPSQISNGAFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNTVPGTEAWNTIDNTLTWEYATIVA
Ga0335027_0002869_9823_10086	F013887	AGG	VNNYLFDAIRLLKPTAEFSFSDNDYSTIKWDVLEGDAPTEKQIDDAIKAVKAKEIADAKAQKDAKAAAQAKLAALGLTVEDLQALGL