NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0002762

Scaffold Ga0335027_0002762


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0002762 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15359
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004430Metagenome / Metatranscriptome438Y
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0002762_1146_1760F007029AGGAGMGFLDNYEDVNARIKRFRLEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTVQDMQKVETLPADSDPWSTKASIEDMATMASSILEIGKNLGGELVAEPPRCSHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVMGSDGKWKPQV
Ga0335027_0002762_245_406F030767GAGGMATYKTKCRLCGRITEHIERVVTDNLPPYVKSLQCVKCGVMGIVLMEDLKDAT
Ga0335027_0002762_3126_3371F004430GAGMATGAEVLSMILPNGGWYIQGDNYEGIQFLECDAITKAQFDAGFAQYDAWKAEQDTKAATDKAALLAKLGITADEAKLLLS
Ga0335027_0002762_393_902F029049N/AMSGLVKVVLDRSQEITAHRVGLERTITRNAEVQDASNFGQVYKNWHELVWQESEAAAAEMAVANYFGDYGFIPEIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGFSPVYILLGWMPVHMVKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGDV
Ga0335027_0002762_890_1075F066777GGCGGMGELTFIRDGLATTIHDNGEITVVAAKQCDECFKWHTELGGFSVRDVSGEVVLWLCAQCR
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