Scaffold Ga0335027_0002305

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0002305
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16668
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F028799	Metagenome	190	Y
F033776	Metagenome	176	Y
F076034	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0002305_14165_14365	F076034	N/A	MDLINISAKQQPVINRLHDAMEHALAYAAAIRDNAQDDQQPIPAELVSSFEADYNRLVSILTEAAI
Ga0335027_0002305_4250_4510	F033776	N/A	MADKLNDRKPDGKGRNFTVNIRMSREEIEAARKLGDGNISMGFRHAIRYACWKDMKPVKLSTMLRSAAVMAQNLEDARRSNTVPEM
Ga0335027_0002305_5555_5707	F010762	GAG	MNETAIKAAFDAWWCDSYGVPPGTHAVMTHVAFAEHILKLVELIQQEAER
Ga0335027_0002305_8368_8640	F028799	GAG	MTRTSITANMTAAELAAWKASNRNQSHCGTVIIQIAKPARKSQRQEWQEFRNETLGMIEAAKRERHFHILPQLFQRLNTANQMLANACIA