NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0002014

Scaffold Ga0335027_0002014


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0002014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17599
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014843Metagenome / Metatranscriptome259Y
F019092Metagenome / Metatranscriptome231Y
F075656Metagenome / Metatranscriptome118N
F104430Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0002014_11357_11902F019092GGAMSNIPILGEKKQTNEPQFRLLYCLVCQTLEELPPYDGAPEQDHLLEIACEQHVFPSGEPHKGKLFVLPLKAWAKTESKKEIIRQIKGGGSAGIAEVDDTFYESRSTFMEDAMTCYRQHNKPKDGCSDWHIKDKMLVPKTIKERRAEGMEKYEESAGPKTYLCDFCPVAISVAQRKRKLMG
Ga0335027_0002014_15617_16192F075656N/AMLSNEQFANLANEGGASRSFKTGESPKGPGVMVSIPGAEKITDAPYTARQAKSFKEENKTKATGDVYQGAWKTGGKIFADISVKHSTLPGARTAGVENKQIAGYDLGGTDVRRPQGGNVYFGRKVPGVESNPEFVASAHRTAEYERMEPKPKAQEFAEQSQISRGSTYKGKKISVNEVYATIAKNRRDRGV
Ga0335027_0002014_2297_2617F104430AGGAGGMGEHSFVDRYIDLNKQYVKHKQEQYKHYKEPNLPYTEELFWDKLVHLGWRKNYTTTECLVLICSACELSITKVIIKDTFDFRGLLNMDERKRHHQKYYCKTTGKIK
Ga0335027_0002014_9623_10102F014843AGGALLNLDGVLSSDTGEPIRAGVMLYYALNINNRVALMTSRKTEDAEHWLNSHGIINYDDLIDRAYYLEGEDLKKRQFVMSRSRAPIEMYVDADPAMCSWVFEEQGIPAIMFMNPGYLAIKNRPDAPKKMRTWDQIEEAITRVNNQKSKEASKPKDLEFWSD
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