Scaffold Ga0335027_0001628

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0001628
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19373
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F030356	Metagenome	185	Y
F041596	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0001628_10168_10761	F001299	N/A	MSQDINQPEYLDNTDPERNYDYWRQDHGGIVTNHNGVADTLLKNDQLYRSMKGDWKRTSLSGSKNIITTTGREDGKFYIRREQKNAEAVARRCAEYRKAAEAGHHDPLAPIGDDGRLTYKWMDLPNVVSIRISDQYFGGMPWAAIKHDRTLKAQFYRVVEREYNQYVCYPGGKLPIPVDVPYPARVGEQKFFKGHTI
Ga0335027_0001628_161_940	F041596	AGGA	MTDQTTNPWADEEPTSKTVKPAKAAAPKKNLEQQLATQVEYDLDGLMTDFPTARDLERFVFDETGIVLNLKGRSNKLKYQVAMDVLNGSEVDPAYLGKDNPYLEKTDLVPEEPMKTLPERLASLPPRTEVQNEFFTAFVPHSDPEYHAQGRKMHCTFRKYRTGEITYEVLGPIEPRPYGEKIDKWGKVRPEIIRWVDPRTGEQLVQREDGTLTPIGRRLRAMMQTFRYNDSNQWVRYVDRDFISLDMKAAINPWDLGNE
Ga0335027_0001628_4962_7241	F030356	AGGA	MLDIKNIPVERINQNRKINANFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGIAPNGEVNFDFVPENEFDAEAARQATNMVSHVINEMNDPHFIMERWIMDANMHKNGMMMIKPVREPIVRYVDTQGTADQLLAFEQQARDSGMNAVQQMRRRTGVDMEAVMAEVQQNLPQVSADNSRNMLDSIIAGMSDSEEFLDDTTQMQDMAQQAQLEGEESVLNDAIARNTIYTAKYKLTGYNLYIKFHPIAQHYWICDPTVPKMEDQPFCGYYDPMTIQEATELYPGLNLSEFERHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGVPVSSAASADPDSRQITVVTVWNRYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYQTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFDPAKDIYPMPPPAGNLQFLEVAMTRIQQDTMAMVGMTTPQDTFNPEVMAPGNSGVKLQLALTPNQIIQDNTVRNAADGLKQAIYLVWRTLIQYGDDHGVKRLAAKFHPDSKSEFMDYTRWDAMELADRKHIQIELALGMQSQENAIGRQQLIQKCQTDLYAVTQGMVAQGTLNETVYQKIKRPFSETLYILGVKDADTYLPSDEEIKAMIESGKAAAGQKEPSPAEKKDLSVAALNAVKAEQITAETQGLDPDTQLNYMAIAMGKTQDYGH