NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0001462

Scaffold Ga0335027_0001462


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0001462 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20487
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (39.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010835Metagenome / Metatranscriptome298N
F011216Metagenome / Metatranscriptome293Y
F013412Metagenome / Metatranscriptome271N
F017997Metagenome / Metatranscriptome237Y
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0001462_12272_12601F013412GGAGGMRHLWSRGFGRLHSDAEVITTDDGKRFLLAIVEFEKRTLANGKPYAQRVTFRSFDPEDMDCVRMLTEGAHIMFDGDCDALAEKSATGWWYANPRITGRIHEIIPPHDES
Ga0335027_0001462_14899_15111F011216AGGAGGVNHLVNANKKVSKTPRTDRQPVVTVAFQHFVKAGFARQLERQLAGANKRIKELEAKADELNDLKKWLEGR
Ga0335027_0001462_2814_3296F010835GGAGMNGVALRTERALVDWLSAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNVGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMRIFAAANS
Ga0335027_0001462_3309_3776F023575N/AMALSKGLALVYGAKGTIQLYTVGVSNALTALTSGTITTIESYDATHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSAADFTQAKLAAGLPKVNGYAAIAGSDGVAVGGVSIDGDYVYSGGGSVKFTSSGKAMVTITVTKYPSLAGTAAVFTL
Ga0335027_0001462_772_915F017997AGAAGVNVIEQIITALLKWLTGLAKTPPTAEDAKPDKELKQKLLDRIDRAGK
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