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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0001305 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21597 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (79.07%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031406 | Metagenome / Metatranscriptome | 182 | Y |
| F047573 | Metagenome | 149 | N |
| F059778 | Metagenome | 133 | N |
| F061679 | Metagenome | 131 | N |
| F081246 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0001305_10837_11058 | F047573 | AGGA | VKDLIFIGVFALGCLCGWVANQAHFEHNDCIDATGKYQRYEAWLSVKNGTYRCFWIEKDYPHRVRVQGVIDVK |
| Ga0335027_0001305_11224_11421 | F031406 | N/A | VILSDLLQGGFMHHNEEARYHFIMMDFVDLIGYYGYDAVMADLDVAIADKVNRLVQRAVAEDKDD |
| Ga0335027_0001305_11566_11769 | F061679 | N/A | MLNDYESTRKTLDGKYLDMCQDCYTGLDVLIPTIDRKDLLHEADMPSMDEIFDEYGDYTDYDDYKDL |
| Ga0335027_0001305_12472_12633 | F081246 | AGGAG | MDKFDYYMEFMSMRLDDPQFRLMYGINEFDKWYADYMEIINQKHGEPENENQV |
| Ga0335027_0001305_8515_8844 | F059778 | AGGA | MKDDLLEKALKYAKHDDYHVTRRIITDLCNEIERLRELNKDVFSRIQDNKEIFNHAERYLWLRNSAWDVPPGAYAPIVVLCDNKMVTWEWLDGTALDLTVDKWRNDATL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |