Scaffold Ga0335027_0000716

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0000716
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29251
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024312	Metagenome	206	N
F035308	Metagenome	172	Y
F038998	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000716_20711_20956	F024312	N/A	MTPLNKLWDLREAVKFWNYKVDTSYPQNAAEMIHQLNLAKYKLKLHKQKHFPELLEQPKRGYIPYEMLTDKFEVFENYSND
Ga0335027_0000716_21126_21398	F038998	N/A	MIVLNICKEDINWKEAKNGKHYANVATDFLKEPDEKGNTHTVWNNQSQEERAEKAKKNYCGRGKQVSYNAPTGKKEFAVNQQESEDDLPF
Ga0335027_0000716_24020_24196	F035308	N/A	LTDTSNIFETCKEEVIAGYSCYSFVIDGCTHYVFGETQEQAFDYLADLINNYGESKQQ