Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0000650 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0000650 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30664
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (15.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30664

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (15.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F032634	Metagenome / Metatranscriptome	179	N
F056544	Metagenome / Metatranscriptome	137	N
F067666	Metagenome / Metatranscriptome	125	N
F079966	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000650_10171_10791	F079966	N/A	MAEVVTAQGLVLAFTNAGGNVYPFACTKDATISITRDFLELAPRTNGVFREYLPNRTSFSISGSGLVKMVQSNLQPITFFDNFIEGTDAAFVGYLDMIDASGNYKVYEFDCIIQDLSLSSSIGQNSSYNFTLQGTGPLTEITTVDSYTVASGNITGRNPATFKLVAVGIDGTWYYNYTVTGTSPNFVISIGSSFNGKVVKAVYIAL
Ga0335027_0000650_15368_15568	F004112	N/A	MLNGHNDTKVDQYRLVRMLMFTMVRLMGDPKTAPKTPEQLWELPGDEEVGKIDEEEYKEIFKRLAK
Ga0335027_0000650_16005_16436	F011844	N/A	MAQVQGSLQNIEIDVAGGSSYKNLVCLRTSSVNSTVDSTTDQTNCGVLTAVGEPQMSLDFDAICETAPTIAQVSYNSLLSAFANKTLVTVRVQNPVVSGSSAGAAYYHQFAGYITSLTMNQATTEFVNFSGTIASTGTIDVTA
Ga0335027_0000650_16444_16875	F010155	AGG	MKDCSNSVRTIYVNALNGNITYNGKDVPVYGQNPFKTLPKNYVIISSITEQANNTNNTFQNIVQVDLDIFSEQYRVNDLSVVDNIAGQILNILIPDSQIDGFQDSDFTVYPMSRINSLYLPLRNGDNYVARKIITINNLVNQK
Ga0335027_0000650_25864_26082	F056544	AGG	MRRKGFYIKKGKEGSIYLHLFVVDFQQYINDLKGDDGWITLRLFERESPDDKGHTHNLEAIKQNKSTNDRPE
Ga0335027_0000650_3996_4391	F032634	N/A	MTYRDLFVLIENIKLNIGNQETKGQKKLFKIYEKLKPSIDEFQAKIDDARLDNAAVDDKGNLILNEKGEYNFNKEGLKKLKADIKKIEESEFEFKKIEVANPGGLEPYFFLNGWVNGVELQEAPKQDEEEL
Ga0335027_0000650_9590_9928	F067666	N/A	MIGELNMKPIKKGDTYVISYSFYEDQCEDTPLDVSTYSFKLQAKNTSGTVMIEWLNATFVQIDNNTRKVTLTPVQTAAYTAGEYTYELEVTISTNKYTWMQGYVEVQNQVTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0000650

Overview

Ecosystem & Geography

Associated Families

Sequences