Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0000564 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32792 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (75.93%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F032163 | Metagenome / Metatranscriptome | 180 | Y |
F062705 | Metagenome / Metatranscriptome | 130 | Y |
F075748 | Metagenome | 118 | Y |
F099186 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0000564_10867_11325 | F032163 | GGA | MSDEIDRLFEELDTYYPGSKRKRKEKVIKEADPEAAWDTKPIKKKLPNGNEVELFTIGAMANALGRPVITIRTWIKEGYLPASPYRLPAKKNKNGEDHQGRRLYSRAMVERTVSLFYSAGLLHTKRVEWSLHRQLSNEIAEAWNQIRADETK |
Ga0335027_0000564_22412_22804 | F099186 | GGA | MANGANLYSGGVYGHKPWDKDRAGVITPEEAAFPPQSYIGPFASNQERLLSQSLAALTMSATEIQAYVRPPLPQIKLFPPRYGFSENEIGIEDIIDLPRTAPTAQRVESDFSNTPNTTQSSSRNTLGGSV |
Ga0335027_0000564_30568_30798 | F075748 | GGA | MATENTKAEILEIIDSTNNFNSYIGSIDQLNGKALGLVIDVAGVDGEDWTDEECLETIKEIVDMANAYRNTHPWDI |
Ga0335027_0000564_5259_5576 | F062705 | GGA | MKEPRVSDTTHRLVQMFLSQSPTPGPGIFEVSADDLGKLYCTCPGYAGRKSCKHTKFVQARIDSNNGSYPLAISDRATKEDALKAKESNLEFREFVIKFGKIEVY |
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