NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000564

Scaffold Ga0335027_0000564


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000564 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32792
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032163Metagenome / Metatranscriptome180Y
F062705Metagenome / Metatranscriptome130Y
F075748Metagenome118Y
F099186Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000564_10867_11325F032163GGAMSDEIDRLFEELDTYYPGSKRKRKEKVIKEADPEAAWDTKPIKKKLPNGNEVELFTIGAMANALGRPVITIRTWIKEGYLPASPYRLPAKKNKNGEDHQGRRLYSRAMVERTVSLFYSAGLLHTKRVEWSLHRQLSNEIAEAWNQIRADETK
Ga0335027_0000564_22412_22804F099186GGAMANGANLYSGGVYGHKPWDKDRAGVITPEEAAFPPQSYIGPFASNQERLLSQSLAALTMSATEIQAYVRPPLPQIKLFPPRYGFSENEIGIEDIIDLPRTAPTAQRVESDFSNTPNTTQSSSRNTLGGSV
Ga0335027_0000564_30568_30798F075748GGAMATENTKAEILEIIDSTNNFNSYIGSIDQLNGKALGLVIDVAGVDGEDWTDEECLETIKEIVDMANAYRNTHPWDI
Ga0335027_0000564_5259_5576F062705GGAMKEPRVSDTTHRLVQMFLSQSPTPGPGIFEVSADDLGKLYCTCPGYAGRKSCKHTKFVQARIDSNNGSYPLAISDRATKEDALKAKESNLEFREFVIKFGKIEVY
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