Scaffold Ga0335027_0000423

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0000423
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37834
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (43.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004694	Metagenome / Metatranscriptome	427	Y
F004740	Metagenome	425	Y
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y
F087117	Metagenome	110	N
F088772	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000423_27194_27565	F014606	GGAG	VVTANLLRGRDRTLASTSFPACAVYAVNEDIEVRSLAPSNRVQYRTLEVSVDYFTAVTASTILDDLLDTGSAAVEAAVLADVTLGGACRDLHLTRVNYVIEPDEERQWGVARHTFQAIYLTQD
Ga0335027_0000423_28400_28717	F036674	GAG	MAVRDFDPSQLATDFGAILDQAGITFAMGGSTVTGVWALSRDVFDAFEDQRRSESKYTIFLLASQLGAGPSLSQTLVRSGVTYFVEQIRFDAEGTGCELDVCKVI
Ga0335027_0000423_3330_3572	F004740	GGAGG	MAALSNPFFGIDVGTLNTLKTKTLDAIQAVLLNQSYSLNGKSVNRADLDKLNMMLGQLQSAIDDANGITTTTSFVSFNGF
Ga0335027_0000423_33632_34066	F088772	N/A	MSLLSFLASAAGGTLLGGITQILGSGVAELKEWSASKRRIAEIAALKEKQIAIAEVEAFAKAVEGTAGTGYTPPPNAPNWMHGLMTIAAFSTQMVRPLMVGGACWYIWSRPADQLAGLQPEILTVSFACVYFWLGVRHQLTRSK
Ga0335027_0000423_34319_34585	F004694	N/A	MENLIAIEPVTVWTSTGTKTAVNFGVRYVNYQNGPAVADTVLLDADGNEVSAQLVQATTAQTEQWNGDDDLPFYTVLAENAGLTPVTA
Ga0335027_0000423_8215_8883	F087117	N/A	MTDDSPSHSDILAKANIANITKKLKAGRTLTTAERKALSDFESQQTGNWAKDLSALARELGLSRQAIYDARARFPNEAPKKHPDGKRENIEAWRQFCSQRLVGKDVATQTLADLKAQLMQREIKLRDMRIARESGEMIDSEIVDEMLGTLAQKLDLLLRLKLEVELGPRVAGKTAAEANLEGRTILDEIRDVVNANIATFQNEAIRQTIRQDDDESGTDRVT