Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0000411 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0000411 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38192
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (31.15%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38192

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (31.15%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F025916	Metagenome	199	Y
F026794	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000411_10075_10284	F011827	N/A	MRNRTHSANTHNLTRSRWKERDAVSSKRHGESCDDIRIACHLWLLRRCPGYAEEHALHVEQYARGIGRA
Ga0335027_0000411_3392_3739	F026794	GGA	MMHIDNPGSISERDLRVSASQQFFADLAAREATRGEVTFDELDRRYADPISREEAVALRPFFEAFCENRVVWCYELMERHGRPMHTWTPITEWDGHFRPECLSLTYRTDNPFATE
Ga0335027_0000411_4195_4482	F009945	GAG	MSTALATFKRTHGVATHRKTGAGHRYPWMAFFTTVTMKDGTRRGFADVAAEYSMAVLEARHKVAEGADELSACKILAERNGIPWPADEPKRKAKL
Ga0335027_0000411_802_1116	F011473	N/A	MTWQKYITDPSTNRPKRGAISRIAALLGTHYGNVRRMFDGVWTPTEQEAESLRAIVESRTNLAPKKRSDAGKKRGQYRKRAVAKTGAVPPQLKGLRSAGKAALK
Ga0335027_0000411_9444_9566	F016246	GGAGG	MTQLDFFPHMPRRLTHDEIIAGFAELLRAVEAMEFWQPYP
Ga0335027_0000411_9595_9798	F025916	N/A	MRGCRLRDCGAPDCPVCAGSEAARLYREQQECDHEEHEHGHCLACGADITDTLAGLAIHCADAAQDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0000411

Overview

Ecosystem & Geography

Associated Families

Sequences