NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000146

Scaffold Ga0335027_0000146


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000146 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62649
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005346Metagenome / Metatranscriptome403Y
F006344Metagenome375Y
F014007Metagenome / Metatranscriptome266Y
F015312Metagenome / Metatranscriptome255Y
F053989Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000146_15555_16124F014007N/AMTDTALVPEIDENIPLPANAAEALPELSAEAEIQMRARTIKLISDLTGIPLVPTEQDKDEAEKLARQMIEDPKKRIEFSKYPNETMAWLAGMVQQSNCSLVDDLSEYKNYVINRLVSEIETTADAKIRVQALTKLGEVDGVDAFKKRTETTHIIKPIEEVEKELLSVLEGIEYKVLEDKTEIPVQNQCN
Ga0335027_0000146_20178_20366F005346AGGAGMSYSNALEYLESKLKDERTLIVENLIQGKLDEGEYKRLCGALQGLDLAMGYIKDLAKRIEET
Ga0335027_0000146_28811_28993F053989AGGAGMSVKDMLKAHMKKGKGAHPDPAVKKMRAGGKTNSEMKKYGRGMAKVMNQRSPMRGSSGPR
Ga0335027_0000146_28999_29190F015312GAGGMKDMGKIQKNTESTGRNGYPEKDVNKGVTHMDMKGAGAATKGKKFVSQINLETNMKYRSGWSP
Ga0335027_0000146_462_668F006344GGAGVEIEDDILDLIRALPNEVNDTSTTTEFKFLTVGSVLWQCHHEIKYLRAEVERLERDSRSKKGKKVYGV
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