Scaffold Ga0335027_0000010

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0000010
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 210956
• Total Scaffold Genes: 312
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (25.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051137	Metagenome	144	Y
F087204	Metagenome	110	Y
F103266	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000010_52764_53150	F103266	N/A	MIARPTNLEDKIGGKVQLEQYQGHALELDEWKLTNVLDDILMVQYVDVNEEGTEIKRGSIWVPINTVNFVWRVGKVILAGPNCKTVKKEDYIVFPNDKGIQAANINNLKNIVFLSESRIFGICEPKFK
Ga0335027_0000010_94014_94316	F087204	N/A	MIITSTHQLENLVNPTMGLDEKEFEEITLKFGSFVCIAKNKKMNFLNFLKFIIIDKKTQKIYAELLGESNFQLIIRTYLTSTPNFYKKIFRSKHNLKKPL
Ga0335027_0000010_97906_98226	F051137	N/A	MAKNKITTLSYFLKRLRDSGYVTDKLFTDYGKHDPRSWTVVIDPRVASVLVTCYNNHNELGEEYFEIYDGGQFVPDNFKIKTSSIEVLIEYLVKFGINNKSLTYKD