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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0000009 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 219492 |
| Total Scaffold Genes | 265 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 183 (69.06%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F030051 | Metagenome | 186 | Y |
| F086677 | Metagenome / Metatranscriptome | 110 | Y |
| F091647 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0000009_216917_217630 | F000325 | AGGAG | MMKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRSMLVDAVKKNKDVRWHERGDFFKDGSLDTEYVDNVLWACESILASGGSLPTMWAYTHIYDSRLSTELGKYINMYASIHDGEDMRQAKAAGFKLFAWCDSDTKIAPKRPRGKAKAAAWRAALPKLVVLEGEKFITCPEIRRGRGVVTCTQTKNSVHCDLCPRGLANVLFPSH |
| Ga0335027_0000009_36645_37112 | F086677 | GGAGG | VYPIKNQDGWVFKEFKNKKKAQQSYKYQKRLSKFDLAPQIYSKICRLEFAEDDGLFFTEPSYWGYITEKAYPVKHNSFSMRQIQNLVDNIYIKTGLKFWDCHWYNVGSVIRLSKKTIVCIDTGAESFDGYSNAWGNPDPGPKCSYCLKYACNCEE |
| Ga0335027_0000009_59334_59657 | F030051 | AGG | MSDPNTVGSFFENLTTSMVSIIIALIGFWTTFIRNLATKKEVEEMIMNQSQYVKDRQYIMERLNDSKEANTTIFRALEKNTEVMNELKIQIATLGKTLEALEDRIER |
| Ga0335027_0000009_9545_9991 | F091647 | N/A | MKILKKALKLSYDRFEPNSFQRRYHFTIAFDGNKPILICQNNPIKVNHKAYRIGQQFNIRTYQDFPYVHSESYLISKLLDRYNSIDTNLSIVNVRINRQGRILLSKPCENCQKILDAVGLCKVYWTTGSTSFEDNNGMLYDVITPATV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |