Scaffold Ga0335025_0138737

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0138737
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008552	Metagenome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0138737_787_1299	F001561	GGAG	MQTLEQKIKHLKKTIETLWHGVSETKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL
Ga0335025_0138737_9_455	F008552	N/A	MIISFEASASEDTTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDVEQQKFTYVFKRNFESGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN