Scaffold Ga0335025_0044543

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0044543
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2930
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066572	Metagenome	126	N
F083629	Metagenome	112	N
F086810	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0044543_1203_1544	F086810	GGCGG	MNYPTTRNKAKILRAVMYLEHEGFTVGQTKNGFVAVDDDGIVIQATPFRTSAQIFHPKLKIYREEYALYIQETYWFTEKLSLLTEWAKDPNAKEPSRVLSISRRPVPSRQRTA
Ga0335025_0044543_1639_2184	F083629	N/A	MRHTNLPNHFYVQVDNQYLGANMPAGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTESFDPDFDDSSQPWGAMGNNIEAVQFKALEGLTVNAFRAEVSGIHTGIVIDWADGYSQYPAEHKPLSLIIADEGYFLLLPNNHFTVKDKHFVDTKKYVDQMKFYKRGDLVYWET
Ga0335025_0044543_772_1206	F066572	N/A	MDNRKLMDELWPKWRLEPVLSSILNEKWGQLHQDKLQSCIRQHRLVRDSKPDISAIHKAYCALIPQNLVGEREVEQTRNDLQRCTPISAEEFAAWDVWAEAMLKNVTNEELEQVREFIGHVPESRRILAVAIEHVRLPSSRRYV