 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034096 Open in IMG/M |
| Scaffold ID | Ga0335025_0016111 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5282 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Roseimaritima → Roseimaritima ulvae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012105 | Metagenome | 283 | N |
| F036604 | Metagenome | 169 | Y |
| F041721 | Metagenome | 159 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335025_0016111_3654_4145 | F036604 | GGAGG | MGLITTAEQLAEAIVTDPERVAACLGRINRFGGQVPNCTVLRHSLEVYYRIDADPDSSDAARLWALLHDCHEILTGDVVRPYVNARLRMDQQAIDNAIIRRLPQLVPQPDSISWRQVMAADRAVGDFELMQMERDRTPYDLCGYAEDSWTSLVRELITIGGAA |
| Ga0335025_0016111_4142_4579 | F041721 | GGGGG | MSEQQLESLRAFAERERGHLLEHCPPIPVVSDWFLEVDRNGRITGQVISGACTSHVQYDPRYRAVFRHDCTFYSSGLGEWLHVVETFWRQTLRQWQAYRRLGEVLQAAEDCTPETHEQRWRAVYECLGWNPDTAREQYLERRAGR |
| Ga0335025_0016111_4576_5163 | F012105 | GGAGG | MIPLAIRRHNLQDLTLGQSTLLTVPSCEERQIRRAMGVLNAERSDGLRLKTLRTPEGLRVWLVECVEVADSTEWKTGKSKRFPGRDVVAVKKSVVKLNEWARVLRRPYRFRVVVRDSVPIVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIVRAKWRFKKRGIRFVVRNIGESVWNVERVSE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |