Scaffold Ga0335025_0002691

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0002691
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13842
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010320	Metagenome / Metatranscriptome	305	Y
F015599	Metagenome / Metatranscriptome	253	Y
F016809	Metagenome / Metatranscriptome	244	Y
F059953	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0002691_10587_10820	F016809	N/A	MKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGHT
Ga0335025_0002691_4054_4443	F010320	N/A	MNYYQMIAFAQHLKNENMKVNNDAFINDAYSEESKLYSEFMHEVVYHDYSYMMSDDHNVYMNGRNHEKQIEEKLHALINICRYDGHDLLDEVISAVPQRYNDVDVHGNDLTHRVIRGWFKPYVFDNFEL
Ga0335025_0002691_4716_5018	F059953	N/A	MNLELTLMELNDLYYVVSKGVESHKEFVEIAKRTTPELEKYFDKELSKSVQLLDKIQTALHNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0335025_0002691_6926_7234	F015599	GGTGG	MKLTIKNYEKLFRKEWDDKNYIEDIDENRNEYRINVWREHMRHFIILERRPVENGYYKIGKWSNEAMCVRYPYWIKHEDIMNINSLMDKLKLMTDEWKPKLL