NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0002544

Scaffold Ga0335025_0002544


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0002544 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14205
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (54.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025976Metagenome / Metatranscriptome199Y
F026862Metagenome / Metatranscriptome196Y
F030736Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0002544_1700_2260F026862GGAGMANHVNTSVRFDKLNDAGKAKLQELYSRVRTGDGYEWFSDIFGIDPEITKLYEWNLENVGPKWCHFEDRGEDYFNTISAWSFPQSGLEWLFEQIASVDPDFIASVMYEDEMPNFFGVYIYNKDGMIDGCEWGEEGEIEEMMHEMVPELNSSEKDSQEYFDLWCENIWDLVHDKQDQVYNDIMSTLK
Ga0335025_0002544_4289_4492F030736N/AMAKLSISKPQCFTDFQWELYQIELQTVKNSKTLDICFDCTVEYQVKMRKEGKCAFPMKRLDKVTEYA
Ga0335025_0002544_9719_9934F025976GGAMKTYYEVYENAIVNHPITGARVRGNTQILTTKNREKALKLYREQERTRWVEEITTDSDGCETTDIITGPYA
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