Scaffold Ga0335025_0001936

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0001936
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16164
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017816	Metagenome	238	Y
F049573	Metagenome	146	Y
F078203	Metagenome	116	Y
F083632	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0001936_12735_12980	F049573	N/A	MVVALPEGKKLISTADAAKILGVSMGRVRQLALKGSGNGGLDGYHAAPTALVFDEAAVKKMAKAKPNTGKTGRPKGGFKAN
Ga0335025_0001936_14110_14301	F078203	GAGG	MEARVPYSEAEADEAWLWVNRHGPSNSWTASNGKAARMIGRLLEERERLLVMLAARENIARPQ
Ga0335025_0001936_422_766	F083632	GGAGG	MSLEDLDAYVWSKLSARRHMAGKALVSRLANRVVRKWPHVAMSQTRPEQYAVVTDEIARSIERSERQNYQMGIILTLILGVLIQEIVKAVLRWWLESASNRIQLLGWQTEMRRR
Ga0335025_0001936_5635_5781	F017816	GAGG	MAPWLIALTGIIYVYVAGDLMYHGRYALATAYLGYAFANIGLYYAAKT