Scaffold Ga0335025_0001359

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0001359
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19163
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F100403	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0001359_1110_1538	F041191	AGG	MDEKMKLLYKPTKLTCEFVISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYAIGERVKVTLQWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEIMNLCVS
Ga0335025_0001359_2246_2431	F049410	N/A	MTRNTRYTNGKEVITFVKIDFIAIGGRKIDHVYFRRKDKNDLIMPLLEWNLKGKFEWEIT
Ga0335025_0001359_3072_3638	F068425	N/A	MKPHHQLITFAVLCLLLIIGLNHCAKEKPKPIPFDYKAEAELMKKQFGIEQAILLNQLEAVNRRLQTANNAKDSIRKREISLTNTNIALMKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFNAFQICDSVSTIKDSLITAYKAENLTDSTLLVISKQETKQQRKGKVAAWCVGGAMFMLWLFVGLK
Ga0335025_0001359_487_681	F044325	N/A	MWPNLNTNNMKQLIQKLLFGYRTNPNAYTPKGGAKLTQQGGNAEAIHSALVLMQYNIRHAKGIN
Ga0335025_0001359_8849_9289	F100403	N/A	MDITSNIPFVIGNILAKFRELGNPETVSRAAAVAVLPELRYRIHVDGKNSNGGAIGTYSNSYLKIREQNNRGTSTKVIISLTRQLENGYTLKATEKGYTIGNTSPANEEIIGHLTEKYGDIWQLTERELEITQIVAQETALLIINK
Ga0335025_0001359_934_1125	F062749	N/A	MKTKLSLILWALSALFMSFWAIKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGFMQQWMKK