Scaffold Ga0335025_0000462

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0000462
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31490
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F037731	Metagenome	167	N
F040621	Metagenome	161	N
F042339	Metagenome	158	Y
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0000462_21535_21954	F037731	GAG	MSTKKQTKPKSEQSSITYKLIRYNLQLFDGLWSIPVAFALFIIAGTLSAEYFGDALISTEYVQYIVLASLIMVFANFITFLGIRLNFRALQREVYSKEIKYELNTYLTTWQKVVLYLVLYAFYFAAFLFVLHLLMTATA
Ga0335025_0000462_22418_22837	F026004	N/A	MGQNKLGNTVLLVAALSIILFTILTSVKTCNKPVTNPAIKRLQDINDSLYQIIETNNAKTDSLFSKIDSLQIHQDTIIQRQQITNEIYRNETYNILSASPTNATNQYRSTLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ
Ga0335025_0000462_22887_23126	F042339	N/A	MERLKVTYYAKITGIQATSYETLAEIYKNKQSIEKAINAEKDAEINKLKKSNRRLIISNTALTLGITGLAFSTIYFAIL
Ga0335025_0000462_25007_25231	F079655	N/A	MSDKKETAMRRLSKALRKRFQGPSVNITWIELDAFMMKAQTWELENILNSYTEGYTDCKNGLPNKAENESNTNV
Ga0335025_0000462_3849_4283	F011136	N/A	MDRPQQDIEDIVCGGKIEAYVNRALWLSWHSARSDYAIKYRKYYELHVERQVDDSKQDETWIGAFIDGEYLYNAIGRLNEFDAILLRLYSKPDFDYKELSAETGIPYSYLRTSIHRALKRIREYVKLQRSLSHTAREIEYLQKM
Ga0335025_0000462_4261_4668	F040621	GAG	LNTCKKCKFYNGTFGTCGTPIVGNNVNAEENDVTYYKEKIKLCGCFMDVKTKFRFASCPARKWFAQDMKEEEIAALDTFIGKVSKANRIESEDLQMLYYWYSKITKKHERPSGCASCIRDLITEFRRQLGKIDKP