Scaffold Ga0335025_0000382

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0000382
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34675
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F015860	Metagenome	251	Y
F032265	Metagenome	180	Y
F057944	Metagenome	135	N
F058955	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0000382_22544_22846	F009952	N/A	MTANIGQVIRDAQLNLFEQRDATFLARCRAIAADVCRQQGSVSINDVRERIQLPANLHPSVLGAVFRTKQFKKVGLVEANHPQAHARIVRVYTLATSQEQ
Ga0335025_0000382_24652_24873	F015860	GGA	MHISYVKIVRDDEGTVIDTQEANGEMRRLNYQIEVLKAALEIEMDRVYDLKELLDQVRRLAFELNEEVLKVQP
Ga0335025_0000382_28643_28852	F057944	AGGAG	MMKQHITDSHPTVRVFPRTLQEAYPKEYVNEDIITGPHRDPPLSDFAILMALIAVVSFFFYMFNKYIWI
Ga0335025_0000382_31392_31994	F032265	GAGG	MATLPQFKQRQLARRSTSDIDRLAKQYKSAVEQITGEYTTAFTGYQANVAEKMKPFEAELATYKESSLPAYEAQKASYLKNLEDYNKLLADIEANPVTEATGIRQVKKARFGLGGLAGTETKSEPFTYYIPREIPKFTETAPTAPATPMAPTVEEFDSGQFAAKKEEVESKFKRELGERRAAKVGAISRKATRPMLQGAE
Ga0335025_0000382_6019_7779	F058955	N/A	MATQRLESGQMQLRSVSGVPMVQAQQQQVDYVGPRAAAQGASQLAQVLERMSASAFQTAAPMRQQEAFQYAADNPLTSEQIQMAKDGVPFGVGSTSSLNYFDQAVAKARSLELSSHFEIEGRNELTKLLTDVKDGRATSAQVSSKIKTMTDGYSKALSNTDPEASIKFRATMATHGHTVLNAAYTAELERAKAKRSALFDSDFDNGIRLLEETVSQGSFTDKNGQQRSIDEIADVFRKNILTQSMLLGDKALQKEYSTKFEVALRNAKINAVTKELITDANMADPEITLQKLRSGDLGKMSPVLKDLITNDFDAVAKVTANYMVAVNNRKSIKDAKIADDKRAGEAQAINLLEQIFPLPEGSPKRKDLINKLIALPEGSVPIGMLKDILKPSGEGDSALNFNLLAGIYNNTITTPEQIYSLVGKGITAKDAVAALKIMQSEDRRDSSTLDRGISQLSGIPVIPGSVVVIDPKGEEFKRRTQLQAEALQIQSAAIAEGKTLTPRQILTQLEDNIAKRRNTEDAKAAKKQLEEFAKRSDGTYKPGRDWITGPVTRDNLPALRQKAGNDQNKLRQIAELEKLLTRSEGN