Scaffold Ga0335025_0000361

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0000361
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35599
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (70.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0000361_1757_1948	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDEKTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVKK
Ga0335025_0000361_31980_32243	F042872	N/A	VTHPIIINHFEGANKTVGSNPTPSDAYHYNDLRRNGNTAVITEPKKAHYQQLNLNLRGGYDLTPEAFVYHPNPAVCRMWAQQHEASK
Ga0335025_0000361_35147_35563	F005502	AGG	MRTLISILALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVCR