Scaffold Ga0335025_0000261

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0000261
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39593
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F001396	Metagenome / Metatranscriptome	705	Y
F072123	Metagenome / Metatranscriptome	121	N
F104779	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0000261_11606_11821	F104779	AGGA	MKNAQLSGEYYGVPIQGIRPSAEVPGSRQAPPSGPYLGRGNFCAANDDTCTGRKAKGTDYCMGHLRSKGDA
Ga0335025_0000261_1707_1934	F000888	AGG	MSAQYFAQLDDNNVVTHVAVVQREFLEANPQRYTGRWVETFFDTEGKTYAGISFTYDEATQDFVAPPSPVIESEV
Ga0335025_0000261_6768_6995	F072123	AGGA	MLSITCENCSTEFYAPELPRRGAICFKCHISTVNLGFTYGKEDFHGPTIKERQQKQVADAKINGINAEPVGSRWI
Ga0335025_0000261_6955_7200	F001396	N/A	MASTPSLLAVVGFNAMPEIWVPIVVAVITGPVVVVLSKLRKENSEQHAEGRELLQAIGTKVDKVGSKLDEHIGWHKGKEEN