NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0224707

Scaffold Ga0335022_0224707


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0224707 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021716Metagenome / Metatranscriptome217N
F030673Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0224707_1_522F030673N/AVNLAVRKVRSFAQDRKKHIAPKMLVASVTFDLTHIFTLVFTSLLYQKAGIEKTIISTVYNGKKIQSGDNYLLPGIAEITWRQAENSCFHQKAKILTVEKEMDMRKIMTDLEINTIWVGVYKSLTMDVFVDDQERSLVTATDNDTIDHSALNAFSFAETQAVILKKTATDLKYET
Ga0335022_0224707_546_1109F021716N/AGWRLFQALKRIPGYGRTFKVTCLCVRGARFADLFWPQTVQADDFLVVIPFGNDLHVRRFVRFDSSQKVFHLDRFVPYPDEYWNNLLSQLQGRLAGKNCKIAVINNFYRHLCCNAHRHEGWLSYQTKINKKIQDLFENTLVKVIDHRLLLDNHRILKKNLKRYRKLQCDAVHFRDYLPIAKNLLIQLQ
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