Scaffold Ga0335022_0121009

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0121009
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1649
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014971	Metagenome	258	Y
F033358	Metagenome	177	Y
F087180	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0121009_1509_1649	F033358	N/A	MSIIPANPKVVGSKPYSGNSDGAAAGPRAGMDEWIRQAIKYGNGAFW
Ga0335022_0121009_20_400	F087180	N/A	VQTQSITDSLLHNDAAALTLAEYLISPDPIARFNFLGTEFPGTPALDQDTLALLDVGDLINIQKSITTSAGPTQFAQDLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEDNVLG
Ga0335022_0121009_974_1111	F014971	AGG	MTHAEAVAMYPHDSVFIQVDDIVRPMTPAEYEAFIERQMIPDPFG