Scaffold Ga0335022_0052237

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0052237
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2686
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0052237_1164_1361	F062749	N/A	MKTKVKASLILWAAAGLFLSFWSVKFAMTGIYYGNSELLTFTIALWASLVSAVCGAGFMQQWMKK
Ga0335022_0052237_1322_1774	F041191	N/A	MWSRFYAAMDEEMKLLFKPKRLTCEFIVPDIEKSDGVQKVIGFSRGSHHYNSIRLGIRKENDYCVLYFYAYIKGKRIVQRISRYYIGELVKCELRWNDYIECKANEGYVFRVAPKCSFPIGYMLYPYAEKDGTEGIEVPINIEIINLKIN
Ga0335022_0052237_2504_2686	F049410	GGA	MTRNTRYTNGKEVITFSKIDFIVIGGRKIDHVYFRRKDKNDLIMPLLEWNLKGKFEWEII