Scaffold Ga0335022_0043712

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0043712
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2954
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060658	Metagenome / Metatranscriptome	132	Y
F078232	Metagenome / Metatranscriptome	116	N
F082227	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0043712_1608_2012	F078232	AGGAGG	MPVLTPQELADTGGCFDCLEPGLQQTMLLSLLQQIQVASFDAARTTASPGGLLTATATAAANPGRRRFVIQNQKNEELFVKFGTGATLSSFHIALPAHNAGSKHSDPFVFEGYTGAISVIPASGSPSYTFAEFV
Ga0335022_0043712_2415_2945	F060658	N/A	MPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDLAQNYNSADPVCPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISVATVALLVAALQARWDTEFGAGAATWSVVSGNLIQVSGTICNSVTLEFSI
Ga0335022_0043712_3_203	F082227	N/A	MIVPVNIVAVQVNQNNSLFVTTGVDYDSDGAVVGSEITSQYTLVPGDSLEGQPTEVVNIANALWTPA