NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0031972

Scaffold Ga0335022_0031972


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0031972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3482
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018500Metagenome / Metatranscriptome234Y
F028727Metagenome / Metatranscriptome190Y
F073089Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0031972_493_684F028727N/AMEALIHFNIGKNGEHKQHEYIRVSDQIKIHIPDKDEFFQIFKTVLFFSTMTGLLSAYIIKRHM
Ga0335022_0031972_693_893F018500N/AMNPSFNITKYTGVMAFYAVLTYIVFPAIAYFLFGKTLEAAGNGFIAGSVVSVILWRMVGMGMVKGA
Ga0335022_0031972_934_1251F073089N/AMSNDYASNKIIPVQESEPIQESIPVSTVCSEHKLTKFILEGIGWTGSILVLCPYVMSLERDLDFILNTLGATGLLIVCITSKQYQSIVINTAWIIGGIYKYYANN

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