Scaffold Ga0335022_0031972

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0031972
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3482
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018500	Metagenome / Metatranscriptome	234	Y
F028727	Metagenome / Metatranscriptome	190	Y
F073089	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0031972_493_684	F028727	N/A	MEALIHFNIGKNGEHKQHEYIRVSDQIKIHIPDKDEFFQIFKTVLFFSTMTGLLSAYIIKRHM
Ga0335022_0031972_693_893	F018500	N/A	MNPSFNITKYTGVMAFYAVLTYIVFPAIAYFLFGKTLEAAGNGFIAGSVVSVILWRMVGMGMVKGA
Ga0335022_0031972_934_1251	F073089	N/A	MSNDYASNKIIPVQESEPIQESIPVSTVCSEHKLTKFILEGIGWTGSILVLCPYVMSLERDLDFILNTLGATGLLIVCITSKQYQSIVINTAWIIGGIYKYYANN