Scaffold Ga0335022_0010959

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0010959
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5779
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046246	Metagenome	151	N
F083896	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0010959_2513_3037	F046246	N/A	MTFSEHAFDACCREAKELGRRLTKTEWLETMQDAYDSYPHQGLIATDGSKPAKGSRIKTVDAAWLEELEQNPAYAGIDIKRELGKAQAWASIRKVGVSQMRFLNWLNKAEASQRPIQYNGTGATSFKAPSAQAASEPAGWQEWVRENSTDPSNADKPWSALETVAQKYILSQLK
Ga0335022_0010959_3465_3809	F083896	N/A	MKTAPLIIHTDMHCAQLEIGEWLRDQGLQQVLQHTPESWVDAFEGRASDLLAINGSFTAEEVVAFIGPPPNHINAVGAACRGYAKRNKLIGSYEKATNPSAHARVIVRWKEGCQ