NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0003094

Scaffold Ga0335022_0003094


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0003094 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10040
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017999Metagenome237N
F033425Metagenome / Metatranscriptome177Y
F060861Metagenome / Metatranscriptome132N
F071234Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0003094_3942_4568F060861GGAMIDLTQYEDAATLNRWFLNNYPLGRIDLQLVEINLDKGIVVFKGSLYRDSNDANPAVTNYAKGERDDYPAHMRKWYLEDTATSCIARCLTLLKGSNKTAPKESMARATSWSVEPKAVLLDEFKNADAHAAEVFAEAVKKAPDIVMRQVGTLPEQICEDGTRMRYKEGISKTTQKPFKGYVCECGRGCPAKWASLSANGTWYFKEVVSG
Ga0335022_0003094_4570_4731F071234GAGGMEMIDKHGVKATFTDKGIDIDLVRSDERCILCNDPRLLHEGMTKLCYSCGCRQ
Ga0335022_0003094_4728_5234F017999N/AMSFDYHKAMAEGHGYNHYVADLLRQYGVPKVDVPAFSIATTHDAIKDKTQNEKDVIVNGLILEVKSRALTFQDQDDFPHSLVLVDTVYGFDQKILKPFAYVYLSQVTKGVFAIPVSTRQFWTIATIYDHARQIEVECYFVTKRHCRPFLELVDVLLERAAQEAEPTCE
Ga0335022_0003094_7183_7440F033425GAGGMAIITSQVTVTTTSQSIVSVDNVSRDVLLHAKHATHIGNSGVTTSNGYLLDNGDEIRLTLTEGADLWAVGASGSGTLHVLVSKID
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