NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0002833

Scaffold Ga0335022_0002833


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0002833 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10406
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013864Metagenome / Metatranscriptome267Y
F034077Metagenome / Metatranscriptome175Y
F038994Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0002833_10030_10320F038994N/AMVLSGSKRVSGIRSLTNKGCHFGSMPGSAPKIGRGTWTSVAYRQGGMTCDCLAKIRFATCAEQYAYLKEKNLIFNCKLTGGVGRQPFVKNCAPAKV
Ga0335022_0002833_3632_4108F013864N/AMNSILPSSTTADTTDTLAKYVVLGIFLILALVAIQYIFRNQLGMIEGLATRKSNKGNTDPLEDENEGDIITIAKRQEELTAKTHKSLNMDSHYTHYNKIIDNMDQWVNAKIVNSLKNVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECARYIDSS
Ga0335022_0002833_9692_9928F034077N/AMVNSGVARRVLSSGSTNGINTDTRNGGGDKKGGAPSSGTGQMRSFAMRNTITETAKNKDFVFKFIERLAPARNSGPKL
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