Scaffold Ga0335022_0001325

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0001325
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14422
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F015868	Metagenome / Metatranscriptome	251	Y
F025011	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0001325_14045_14422	F025011	AGGA	MPAIVTASQLRTVLGVSVSLYSDSYLDEIINTAEAVILPMLVANTSAVNAYKLESNVATYYTQRAHHFVAGQSVIVAGLPSPFSATVTVLDVKEYSFTAARTNADVTLREIIPMGSATLSGYSAAD
Ga0335022_0001325_3569_4813	F003134	N/A	MTQWSPIWKVEIDGIEYTDAVLANLVIQSGRTNIYEQAQAGYTNIQLIDVNQATIPVAVNSTISIQVKDTSNTFIPIFGGNVVDIGLEVRDVGTTMFTQTYSITALGALARLPKALTNGVLSKDFDGNQIYTILSNLLLNTWAEVPGALTWATYDPTTTWANAENVGLGEIDRPGDYELAARSSDRTDVYSLVSALATSGLGYIYEDAQGRISYADATHRSQYLSNNGYVQVTANQARAAGLRTQTRAGDVRNDLTIKYGATSSAEKSAIDAASILTYGTLAQIITTTLHNATDAEDQADFYLALRKDPQPIFSEITYDLTNPEVDNSDRDNLISVFMGMPLAINDLPSNMGSIFQGFVEGWTFRAGYNTLSVSLNLSPVAFSLQALQWDEISNTFTWSGVSPTLDWARATIIT
Ga0335022_0001325_42_413	F015868	N/A	VAGQSVIVAGLPSPFSATVTVLDVKEYSFTAARTNADVTLREIIPMGSATLSGYSAADLYANSAPIESAVLAVSVEVFQSRVAAGGQIEGVDFASTPYRMGRSLTNRVSTLLMPFLDVETVVQ
Ga0335022_0001325_7261_7917	F005697	AGGCGG	MGFLDNYEASRERLERWLATYPTGRIETRIVEFSAEKGYVLVEAKAFRNDTDLHPAGIDYAYGYQGAYQQNMKRWFVEDTTTSAIMRCQQLVMGGAERSTREIMEQVERTPAKVANADSTDYWTTKFGDLPSYKTAAEAEQSGVPSLGSSMDEIAKQLGGQLVQEAPQCKHGHMVWKQAHEGAPKQWGGYFCTERTKATQCTPRWYVLASDGKWKPQV