Scaffold Ga0335022_0001160

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0001160
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15315
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F058252	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0001160_10350_10727	F021128	AGG	MKLKNKNLAPVGGWYWKYEIKRNDVVYPAIVYGSTWNSLIQNIQKDYRSNGVDLPSNIEQMVEDQTCQRQPSDRCWYNDGLGDRIAQAIHTVAAVTDKVLGTKLEHKARGCSSCNKRRNALNSLS
Ga0335022_0001160_10764_12614	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCIKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGAAGDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDITFIGIGNPSAGDNPHTRWAIPKDQSNFDSVSPDMDKWETGTGVCLFYNGMRSPNFAAPASEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPIWDSEGFTKVAGFDTSFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVALCRAAGVQPQKFGMDVSGDGGRVGQAIIREWLRFDSTGVSIALISSMGKPTDRLAAEVDKRPCKDVYDRLVSEFYYSCYHAFKSRVIFGIDAASELARELCLRRYTIKNKKIAIETKDDLKRRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWAREEKLADVSQDDDYGSDDNGDW
Ga0335022_0001160_12753_12980	F058252	AGGA	MTTNNTFESRIICEGTEVSESPTKILFRQRFNQCWVSKSDIRMKETLGFLDGEKMIRIVVPEDVANTLELEGMLD
Ga0335022_0001160_4550_5959	F025268	N/A	MSEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRAINDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAPFNEADPSTWARLVRVPRYIKTVLENGCAYIPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYSQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS