Scaffold Ga0335022_0000774

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0000774
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18379
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F004206	Metagenome / Metatranscriptome	448	Y
F027822	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0000774_1230_1436	F002621	N/A	MISRMIWLLVLPICLGCQQTKVVLVPSGDPVMLAKPTTASVYGFDKDKKLVGPSKVVLPAGWYVLPKQ
Ga0335022_0000774_6290_6703	F004206	GAG	LIPLITDYLLHKLPDSFQGWTREAVEDYVMFHAEQGTLKVALQDGHVVAVLVGWRQMGPEPKEWTWQKSDSNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGHRNGKLTTYKKGSMPIYKVANKKYGRS
Ga0335022_0000774_8956_9390	F027822	N/A	MPAEIKDIGSIYAEATAGSEAARQWLAAWHFYCHAIDDLVDGDVVLNTESMLDLLIQANSLYSMPFYIEHGIRLAPMVAQVTSTYADSVAWEKSDIEWKARIADVIRCCGNDMVLQVAWILGGYPRMRAISLSLREAAYHSQHS