Scaffold Ga0335022_0000637

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0000637
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20123
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (95.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F004430	Metagenome / Metatranscriptome	438	Y
F009331	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0000637_18485_18730	F004430	AGG	MAKAYQVLEMLIPQGGWAMTGDEYEGIEWFECQPITKAQFEAGFAQYDSWKAEQDSKAAADKAALLAKLGITADEAKLLLS
Ga0335022_0000637_6270_6794	F004110	AGGAG	MAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQSLLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGISPWQ
Ga0335022_0000637_8144_8323	F009331	GAGG	MICQNCLKGGEENTLAHYKRSAQWHDKCDDKGCVCQHKTGPGYVKRDGTKVPLMQTQSP