NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0000637

Scaffold Ga0335022_0000637


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0000637 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20123
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (95.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004110Metagenome452Y
F004430Metagenome / Metatranscriptome438Y
F009331Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0000637_18485_18730F004430AGGMAKAYQVLEMLIPQGGWAMTGDEYEGIEWFECQPITKAQFEAGFAQYDSWKAEQDSKAAADKAALLAKLGITADEAKLLLS
Ga0335022_0000637_6270_6794F004110AGGAGMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQSLLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGISPWQ
Ga0335022_0000637_8144_8323F009331GAGGMICQNCLKGGEENTLAHYKRSAQWHDKCDDKGCVCQHKTGPGYVKRDGTKVPLMQTQSP

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